https://yuw444.r-universe.devRecent package updates in yuw444R-universehttps://github.com/yuw444.pnghttps://yuw444.r-universe.devTue, 06 Oct 2026 20:24:48 GMTywang@mcw.com (Yu Wang)Ancestry-specific rare variant burden testing for admixed populations. Splits genotype dosages by local ancestry (as inferred by 'RFMix') into per-ancestry dosages, using either phased haplotypes or unphased genotypes with shrinkage toward global ancestry, and writes them to 'SeqArray' GDS files. Ancestry-stratified gene-level tests are then run with the 'SMMAT' framework of Chen et al. (2019) <doi:10.1016/j.ajhg.2018.12.012> as implemented in 'GMMAT', and the per-ancestry p-values are combined with the Cauchy combination test of Liu and Xie (2020) <doi:10.1080/01621459.2018.1554485>.https://github.com/r-universe/biocstaging/actions/runs/37593238420Tue, 06 Oct 2026 20:24:48 GMTlantern0.99.0successhttps://biocstaging.r-universe.devhttps://github.com/BiocStaging/lanternlantern.Rmdlantern.htmlGetting started with lantern2026-10-06 19:44:262026-10-06 19:44:26real-data-chr19.Rmdreal-data-chr19.htmlReal data: chr19 association testing with binary, continuous, and count phenotypes2026-07-17 19:40:062026-07-19 06:33:54split-intuition.Rmdsplit-intuition.htmlSplit intuition: matrix examples for two and more populations2026-07-17 19:40:062026-10-06 19:44:26toy-vcf-msp-example.Rmdtoy-vcf-msp-example.htmlToy example: splitting a VCF + MSP file (two and more populations)2026-07-17 19:40:062026-10-06 19:44:26